liftOver
This is the development version of liftOver; for the stable release version, see liftOver.
Changing genomic coordinate systems with rtracklayer::liftOver
Bioconductor version: Development (3.21)
The liftOver facilities developed in conjunction with the UCSC browser track infrastructure are available for transforming data in GRanges formats. This is illustrated here with an image of the EBI/NHGRI GWAS catalog that is, as of May 10 2017, distributed with coordinates defined by NCBI build hg38.
Author: Bioconductor Package Maintainer [aut, cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("liftOver")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("liftOver")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("liftOver")| Changing genomic coordinate systems with rtracklayer::liftOver | HTML | R Script |
Details
| biocViews | BasicWorkflow, Workflow |
| Version | 1.30.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), gwascat, GenomicRanges, rtracklayer, Homo.sapiens, BiocGenerics |
| Imports | |
| System Requirements | |
| URL | https://www.bioconductor.org/help/workflows/liftOver/ |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | liftOver_1.30.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/liftOver |
| Source Repository (Developer Access) | git clone [email protected]:packages/liftOver |
| Package Short Url | https://bioconductor.org/packages/liftOver/ |
| Package Downloads Report | Download Stats |