HiCDataHumanIMR90
This is the development version of HiCDataHumanIMR90; for the stable release version, see HiCDataHumanIMR90.
Human IMR90 Fibroblast HiC data from Dixon et al. 2012
Bioconductor version: Development (3.21)
The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).
Author: Nicolas Servant
Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>
citation("HiCDataHumanIMR90")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HiCDataHumanIMR90")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCDataHumanIMR90")| HiC Data Human Fibroblast Dixon et al. 2012 | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, GEO, Genome, Homo_sapiens_Data |
| Version | 1.27.0 |
| License | GPL-3 |
| Depends | R (>= 3.5.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | HiTC, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | HiTC |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HiCDataHumanIMR90_1.27.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HiCDataHumanIMR90 |
| Source Repository (Developer Access) | git clone [email protected]:packages/HiCDataHumanIMR90 |
| Package Short Url | https://bioconductor.org/packages/HiCDataHumanIMR90/ |
| Package Downloads Report | Download Stats |