InteractiveComplexHeatmap
This is the development version of InteractiveComplexHeatmap; for the stable release version, see InteractiveComplexHeatmap.
Make Interactive Complex Heatmaps
Bioconductor version: Development (3.21)
This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.
Author: Zuguang Gu [aut, cre] (ORCID:
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("InteractiveComplexHeatmap")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("InteractiveComplexHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("InteractiveComplexHeatmap")| 1. How to visualize heatmaps interactively | HTML | R Script |
| 2. How interactive complex heatmap is implemented | HTML | R Script |
| 3. Functions for Shiny app development | HTML | R Script |
| 4. Decorations on heatmaps | HTML | R Script |
| 5. Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap() | HTML | R Script |
| 6. A Shiny app for visualizing DESeq2 results | HTML | R Script |
| 7. Implement interactive heatmap from scratch | HTML | R Script |
| 8. Share interactive heatmaps to collaborators | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0), ComplexHeatmap(>= 2.11.0) |
| Imports | grDevices, stats, shiny, grid, GetoptLong, S4Vectors(>= 0.26.1), digest, IRanges, kableExtra (>= 1.3.1), utils, svglite, htmltools, clisymbols, jsonlite, RColorBrewer, fontawesome |
| System Requirements | |
| URL | https://github.com/jokergoo/InteractiveComplexHeatmap |
| Bug Reports | https://github.com/jokergoo/InteractiveComplexHeatmap/issues |
See More
| Suggests | knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve(>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | gINTomics, mineSweepR |
| Suggests Me | CTexploreR, simona, simplifyEnrichment, metasnf |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | InteractiveComplexHeatmap_1.15.0.tar.gz |
| Windows Binary (x86_64) | InteractiveComplexHeatmap_1.15.0.zip |
| macOS Binary (x86_64) | InteractiveComplexHeatmap_1.15.0.tgz |
| macOS Binary (arm64) | InteractiveComplexHeatmap_1.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/InteractiveComplexHeatmap |
| Source Repository (Developer Access) | git clone [email protected]:packages/InteractiveComplexHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/InteractiveComplexHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/InteractiveComplexHeatmap/ |
| Package Downloads Report | Download Stats |