nullrangesData

This is the development version of nullrangesData; for the stable release version, see nullrangesData.

ExperimentHub datasets for the nullranges package

Bioconductor version: Development (3.21)

Provides datasets for the nullranges package vignette, in particular example datasets for DNase hypersensitivity sites (DHS), CTCF binding sites, and CTCF genomic interactions. These are used to demonstrate generation of null hypothesis feature sets, either through block bootstrapping or matching, in the nullranges vignette. For more details, see the data object man pages, and the R scripts for object construction provided within the package.

Author: Michael Love [aut, cre] (ORCID: ), Wancen Mu [aut] (ORCID: ), Eric Davis [aut] (ORCID: ), Mikhail Dozmorov [aut]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("nullrangesData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nullrangesData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nullrangesData")

nullrangesData package	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeqData, ENCODE, ExperimentData, ExperimentHub, Homo_sapiens_Data, SequencingData
Version	1.13.0
License	GPL-3
Depends	R (>= 4.1.0), ExperimentHub, GenomicRanges, InteractionSet
Imports	utils
System Requirements
URL

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	iSEEhub, nullranges
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nullrangesData_1.13.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/nullrangesData
Source Repository (Developer Access)	git clone [email protected]:packages/nullrangesData
Package Short Url	https://bioconductor.org/packages/nullrangesData/
Package Downloads Report	Download Stats