curatedTBData
This is the development version of curatedTBData; for the stable release version, see curatedTBData.
Curation of existing tuberculosis transcriptomic studies
Bioconductor version: Development (3.21)
The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.
Author: Xutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]
Maintainer: Xutao Wang <xutaow at bu.edu>
citation("curatedTBData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("curatedTBData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("curatedTBData")| curatedTBData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data |
| Version | 2.3.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.3.0) |
| Imports | AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats |
| System Requirements | |
| URL | https://github.com/compbiomed/curatedTBData |
| Bug Reports | https://github.com/compbiomed/curatedTBData/issues |
See More
| Suggests | BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | curatedTBData_2.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/curatedTBData |
| Source Repository (Developer Access) | git clone [email protected]:packages/curatedTBData |
| Package Short Url | https://bioconductor.org/packages/curatedTBData/ |
| Package Downloads Report | Download Stats |