CardinalWorkflows
This is the development version of CardinalWorkflows; for the stable release version, see CardinalWorkflows.
Datasets and workflows for the Cardinal MSI
Bioconductor version: Development (3.21)
Datasets and workflows for Cardinal: DESI and MALDI examples including pig fetus, cardinal painting, and human RCC.
Author: Kylie A. Bemis <k.bemis at northeastern.edu>
Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>
Citation (from within R, enter
citation("CardinalWorkflows")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CardinalWorkflows")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CardinalWorkflows")| 1. Segmentation: Unsupervised analysis workflow | HTML | R Script |
| 2. Classification: Supervised analysis workflow | HTML | R Script |
| 3. Class comparision: Statistical testing workflow | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ImagingMassSpectrometryData, MassSpectrometryData |
| Version | 1.39.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Cardinal, methods |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CardinalWorkflows_1.39.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CardinalWorkflows |
| Source Repository (Developer Access) | git clone [email protected]:packages/CardinalWorkflows |
| Package Short Url | https://bioconductor.org/packages/CardinalWorkflows/ |
| Package Downloads Report | Download Stats |