rDGIdb

This package is for version 3.20 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see rDGIdb.

R Wrapper for DGIdb

Bioconductor version: Release (3.20)

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (https://www.dgidb.org/).

Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel

Maintainer: Lars Bosshard <bosshard at nexus.ethz.ch>

Citation (from within R, enter citation("rDGIdb")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rDGIdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep
Version	1.31.0
In Bioconductor since	BioC 3.4 (R-3.3) (8 years)
License	MIT + file LICENSE
Depends
Imports	jsonlite, httr, methods, graphics
System Requirements
URL

Suggests	BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)	rDGIdb_1.31.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rDGIdb
Source Repository (Developer Access)	git clone [email protected]:packages/rDGIdb
Bioc Package Browser	https://code.bioconductor.org/browse/rDGIdb/
Package Short Url	https://bioconductor.org/packages/rDGIdb/
Package Downloads Report	Download Stats