RcwlPipelines

This is the released version of RcwlPipelines; for the devel version, see RcwlPipelines.

Bioinformatics pipelines based on Rcwl

Bioconductor version: Release (3.20)

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")

biocViews	Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version	1.22.0
In Bioconductor since	BioC 3.9 (R-3.6) (5.5 years)
License	GPL-2
Depends	R (>= 3.6), Rcwl, BiocFileCache
Imports	rappdirs, methods, utils, git2r, httr, S4Vectors
System Requirements	nodejs
URL

Suggests	testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	ReUseData
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	RcwlPipelines_1.22.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)	RcwlPipelines_1.22.0.tgz
macOS Binary (arm64)	RcwlPipelines_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access)	git clone [email protected]:packages/RcwlPipelines
Bioc Package Browser	https://code.bioconductor.org/browse/RcwlPipelines/
Package Short Url	https://bioconductor.org/packages/RcwlPipelines/
Package Downloads Report	Download Stats